Well, got the cylinder off tonight. Not that difficult after I took the electronics out and slid the radiator up out the way. Bore looks good, no scrapes or scratches. Honing marks are gone from the active stroke area however Piston is 1st bore 'A'. There was a fair amount of carbon build up on the piston (1/32"?). Got that all off and cleaned up. Also cleaned up the transfer ports, exhaust ports and the head. There was some dark brown discoloration below the two rings on the sides of the bore in line with the main transfer ports. Does this mean I am getting blow-by around the rings? Is this normal? Wondering if I should put in a new top end since its apart, that decision can wait though.
My main area of concern is the cylinder studs. 3 of the 4 show some corrosion, particulary the front ones. I would say it is 'moderate surface rust'. I'm guessing because the water passage is at the front and at some time a small amount of water leaked to the stud area. I put "PB Blaster" penetrating spray on the threads before removing the nuts at the base of the cylinder and they came off pretty easily. Now my concern is when I replace the cylinder and torque down the nuts that I shear the studs.
Sent some pictures to a number of cylinder repair places around the country. Only got one estimate back "probably less than $200". Still looking for a local, good quality (and cheaper) alternative.
J.