Thanks for the reply Tony. It sounds like you have the same manual (TY250B by Cycleserv Publications) as me. The problem for me was that the left side case (as per the manual) is the magneto side, but in the parts fiche for the TY250B the shim is shown on the primary gear side. The fact that I didn't have any shim fitted at all doesn't help.
I also looked at the DT250 parts fiche and that doesn't have any shim fitted. The shim appears to be a TY specific part and was never fitted on any model year of the DT.
From what I can see the shim would control axial main bearing float/nip if fitted on the inside, and primary gear alignment with the clutch basket gear if fitted on the outside. From an engineering standpoint I would be surprised to see a shim fitted on the inside of the main bearing for three reasons:1, it would increase the stress on the crank. 2, the crank has a tight tolerance given for width during rebuild. 3, I've never come across any other crank that uses a shim in that position.
The problem I have is that I write repair manuals for a living (on cars though) so I know that no one is infallible and this is an easy area to make a mistake about when it comes to writing the process down in a book, or even producing the parts fiche drawings. Maybe the only solution is to bolt the empty cases together and measure the width between the main bearing housings and compare that to the width of the crank with the main bearings fitted without a shim. I guess if the difference is in the range of the shim sizes 0.3 - 0.5mm then we will have a definitive answer.
This whole question might be academic anyway as the shims are no longer available and I was quoted